PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 399aa    MW: 43916.9 Da    PI: 4.8479
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08135178155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+++ ++gr      d      + k+++lg f+ta  Aa+a+++a+ k++g
  Achn363861 135 SQYRGVTFYWRTGR------D------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178
                 789***99999999......5......56************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.813126186IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-10135187IPR016177DNA-binding domain
SMARTSM003804.0E-21136192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-11150186IPR001471AP2/ERF domain
PROSITE profilePS5103211.588175265IPR001471AP2/ERF domain
SMARTSM003803.1E-7217271IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-9221267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-10232265IPR001471AP2/ERF domain
CDDcd000185.24E-13232267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MWDLNDSPDP TTRNDESEVC SYGDDDKGKR VGSVSNSSSS AVDDEDSGGQ KRSGSKIFGF  60
SVTQPDDTYS SEPDPPVTHQ FFPSSDDGGA ANFPRAHWVG VRFSQSEGPA AAAGKFTNIT  120
QPLKKSRRGP RSRSSQYRGV TFYWRTGRDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVE  180
ADINFTLEEY EEDLKQVASL ILLNYWYFSA ENSILIRNTW ADIENLVANP LYVYLGLFDT  240
EIEAARAYDK AAIKCNGKEA VTNFDPSIYE DEFNSTECSG NPSDHNLDLS LGCSASKQKS  300
RDVAADQHHT SMPFEVSDLR NHGFQPKVQC PSSSTNDNGG YLSLSTSDCQ NWQLNIINNP  360
PQVFATAAAS SGFPQQKITT TPQNWLQQNG FHFSMRPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2474010.0JN247401.1 Actinidia deliciosa cultivar Hayward APETALA2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267881.11e-100transcription factor APETALA2
SwissprotP479271e-86AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLH9M5X40.0H9M5X4_ACTDE; APETALA2
STRINGVIT_07s0031g00220.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-82AP2 family protein